2018

Pucker, B. and Brockington, S.F. (2018). Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes. BMC Genomics. 2018;19(1). doi:10.1186/s12864-018-5360-z [pdf]
 
Pucker, B., Schilbert, H.M., Schumacher, S.F. (2018). Integrating Molecular Biology and Bioinformatics Education. Preprints. doi:10.20944/preprints201811.0183.v1 [pdf]
 
Schilbert, H.M., Pellegrinelli, V., Rodriguez-Cuenca, S., Vidal-Puig, A. & Pucker, B. (2018). Harnessing natural diversity to identify key residues in Prolidase. bioRxiv 423475; doi:10.1101/423475 [pdf]
 
Brinkrolf, C., Henke, N. A., Ochel, L., Pucker, B., Kruse, O., and Lutter, P. (2018). Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA. Journal of Integrative Bioinformatics 15. [pdf]
 
Whitford, C. M., Dymek, S., Kerkhoff, D., März, C., Schmidt, O., Edich, M., Droste, J., Pucker, B., Rückert, C. and Kalinowski, J. (2018). Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications. Journal of Biological Engineering, 12(1). doi:10.1186/s13036-018-0105-8 [pdf]
 
Haak, M., Vinke, S., Keller, W., Droste, J., Rückert, C., Kalinowski, J., & Pucker, B. (2018). High Quality de Novo Transcriptome Assembly of Croton tiglium. Frontiers in Molecular Biosciences, 5. doi:10.3389/fmolb.2018.00062 [pdf]
 
Henke, N.A., Frohwitter, J., Peters-Wendisch, P. and Wendisch, V.F. (2018). Carotenoid production by recombinant Corynebacterium glutamicum: strain construction, cultivation, extraction and quantification of carotenoids and terpenes. In: Microbial Carotenoids. (accepted).

 

Friedrich, A., & Pucker, B. (2018). Peer-review as a teaching method (Working Paper der AG Forschendes Lernen in der dghd, 2, 2018). Carl von Ossietzky Universität Oldenburg.[pdf]

 

Henke, N. A., Wichmann, J., Baier, T., Frohwitter, J., Lauersen, K. J., Risse, J. M., Peters-Wendisch, P., et al. (2018). Patchoulol production with metabolically engineered Corynebacterium glutamicum. Genes, 9, 219. doi:10.3390/genes9040219

 

Henke, N. A., Wiebke, D., Perez, F., Peters-Wendisch, P., & Wendisch, V. F. (2018). Coproduction of cell-bound and secreted value-added compounds: simultaneous production of carotenoids and amino acids by Corynebacterium glutamicum. Bioresorce Technology, 247, 744-752. doi:10.1016/j.biortech.2017.09.167

 

 

2017

Pucker, B., Holtgräwe, D., & Weisshaar, B. (2017). Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. BMC Research Notes, 10, 667. doi:10.1186/s13104-017-2985-y [pdf]

 

Alkhateeb, R., Rückert, C., Rupp, O., Pucker, B., Hublik, G., Wibberg, D., Niehaus, K., Pühler, A., Vorhölter, F.J. (2017). Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data. Journal of Biotechnology. [pdf]

 

Henke, N. A., Peters-Wendisch, P., Wendisch, V. F. (2017). Carotenoid production by Corynebacterium: the workhorse of industrial amino acid production as host for production of a broad spectrum of C40 and C50 carotenoids. In: Carotenoids. Cvetković D (Ed); 1st ed. Rijeka, Croatia: IN TECH d.o.o. [pdf]

 

Heider, S., Henke, N. A., Peters-Wendisch, P., Wendisch, V. F. (2017). C50 carotenoids: Occurrence, biosynthesis, glycosylation and metabolic engineering for their overproduction. In: Bio-pigmentation and Biotechnology implications. Singh OV (Ed); Hoboken, NJ, USA: John Wiley & Sons, Inc. [pdf]

 

Henke, N. A., Heider, S. A., Hannibal, S., Wendisch, V. F., Peters-Wendisch, P. (2017). Isoprenoid pyrophosphate-dependent transcriptional regulation of carotenogenesis in Corynebacterium glutamicum. Front. Micro. [pdf]

 

Taniguchi, H., Henke, N. A., Heider, S. A., Wendisch, V. F. (2017). Overexpression of the primary sigma factor gene sigA improved carotenoid production by Corynebacterium glutamicum: application to production of β-carotene and the non-native linear C50 carotenoid bisanhydrobacterioruberin. Metabolic Engineering Communications 4: 1-11 [pdf]

 

Brito, L.F., Irla, M., Walter, T., and Wendisch, V.F. (2017). Magnesium aminoclay-based transformation of Paenibacillus riograndensis and Paenibacillus polymyxa and development of tools for gene expression. Appl. Microbiol. Biotechnol. 101, 735–747. [pdf]

 

 

2016

Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P., and Weisshaar, B. (2016). A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PloS‑ONE 11:e0164321. [pdf]

 

Henke, N. A., Heider, S. A., Peters-Wendisch, P., Wendisch, V. F. (2016). Production of the Marine Carotenoid Astaxanthin by Metabolically Engineered Corynebacterium glutamicum. Mar. Drugs 14(7). [pdf]

 

Frommer, B, Hain, C., Kampa, J., Königs, C., Linder, M., Perez Knoche, S., Sahin, M., Schmidt, P., Schöller, M., Kalinowski, J., Müller, K.M., Droste, J., Hoffmann, N., Roeloffs, F., Pucker, B. (2016). Generating Binding Proteins – via in vivo directed evolution in E. coli. [pdf]

 

 

2014

Fust A., Hollmann B., Pucker B., Wollborn D., Tiemann J., Droste J., Brosda S., Blunk S., Riedl S., Bleckwehl T. (2014). The Transformers. From Carbon Dioxide to Biofuel. [pdf]

 

Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Sörensen, T.R., and Weisshaar, B. (2014). Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris). BMC Plant Biol. 14: 249. [pdf]